1. ISCA
      EDAM: Edit Distance Tolerant Approximate Matching Content Addressable Memory
      Robert Hanhan, Esteban Garzón, Zuher Jahshan, Adam Teman, Marco Lanuzza, and Leonid Yavits
      In Proceedings of the 49th Annual International Symposium on Computer Architecture, 2022


    1. VLSI Tech.
      HERMES Core – A 14nm CMOS and PCM-based In-Memory Compute Core using an array of 300ps/LSB Linearized CCO-based ADCs and local digital processing
      R. Khaddam-Aljameh, M. Stanisavljevic, J. Fornt Mas, G. Karunaratne, M. Braendli, F. Liu, A. Singh, S. M. Müller, U. Egger, A. Petropoulos, T. Antonakopoulos, K. Brew, S. Choi, I. Ok, F. L. Lie, N. Saulnier, V. Chan, I. Ahsan, V. Narayanan, S. R. Nandakumar, M. Le Gallo, P. A. Francese, A. Sebastian, and E. Eleftheriou
      In 2021 Symposium on VLSI Technology, 2021


    1. BIBM
      Variant Calling Parallelization on Processor-in-Memory Architecture
      D. Lavenier, R. Cimadomo, and R. Jodin
      In 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Dec 2020
    2. MICRO
      GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
      Damla Senol CaliGurpreet S. Kalsi, Zülal Bingöl, Can Firtina, Lavanya Subramanian, Jeremie S. Kim, Rachata Ausavarungnirun, Mohammed AlserJuan Gomez-Luna, Amirali Boroumand, Anant Norion, Allison Scibisz, Sreenivas SubramoneyonCan AlkanSaugata Ghose, and Onur Mutlu
      In 2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture (MICRO), Dec 2020
    3. SYSTOR
      BioSEAL: In-Memory Biological Sequence Alignment Accelerator for Large-Scale Genomic Data
      Roman Kaplan, Leonid Yavits, and Ran Ginosasr
      In Proceedings of the 13th ACM International Systems and Storage Conference, Dec 2020


    1. IEEE Micro
      RASSA: Resistive Prealignment Accelerator for Approximate DNA Long Read Mapping
      Roman Kaplan, Leonid Yavits, and Ran Ginosar
      IEEE Micro, Jul 2019


    1. BMC Genomics
      GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
      Jeremie S. KimDamla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata GhoseMohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, and Onur Mutlu
      BMC Genomics, May 2018



      1. BIBM
        DNA mapping using Processor-in-Memory architecture
        Dominique Lavenier, Jean-Francois Roy, and David Furodet
        In 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), May 2016