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Background & Past Publications on PIM
- HERMES
Core – A 14nm CMOS and PCM-based in-memory compute core using
an array of 300ps/LSB linearized CCO-based ADCs and local
digital processing. R Khaddam-Aljameh, M
Stanisavljevic, J Fornt Mas, G Karunaratne, M Braendli, F Liu, A
Singh, SM Müller, U Egger, A Petropoulos, T Antonakopoulos, K
Brew, S Choi, I Ok, FL Lie, N Saulnier, V Chan, I Ahsan, V
Narayanan, SR Nandakumar, M Le Gallo, PA Francese, A Sebastian, E
Eleftheriou. Proceedings of the Symposium on VLSI Technology,
June 13-19, 2021, Kyoto, Japan.
- Variant
calling parallelization on processor-in-memory architecture.
Dominique Lavenier, Remy Cimadomo, Romaric Jodin. Proceedings
of the IEEE International Conference on Bioinformatics and
Biomedicine (BIBM 2020), Dec 16-19, 2020, Seoul, Korea.
- GenASM:
a low-power, memory-efficient approximate string matching
acceleration framework for genome sequence analysis.
Damla Senol Cali, Gurpreet S Kalsi, Zülal Bingöl, Can Firtina,
Lavanya Subramanian, Jeremie S. Kim, Rachata Ausavarungnirun,
Mohammed Alser, Juan Gómez-Luna, Amirali Boroumand, Anant Nori,
Allison Scibisz, Sreenivas Subramoney, Can Alkan, Saugata Ghose,
Onur Mutlu. Proceedings of the 53rd IEEE/ACM International
Symposium on Microarchitecture (MICRO 2020), October 17-21,
2020, Athens, Greece.
- BioSEAL:
in-memory biological sequence alignment accelerator for
large-scale genomic data. Roman Kaplan, Leonid
Yavits, Ran Ginosar. Proceedings of the 13th ACM
International Systems and Storage Conference (SYSTOR '20),
36-48, June 2-4, 2020. Haifa, Israel.
- RASSA:
Resistive prealignment accelerator for approximate DNA long
read mapping. Roman Kaplan, Leonid Yavits, Ran
Ginosar. IEEE Micro, 39 (4): 44-54, 2019.
- GRIM-Filter:
fast seed location filtering in DNA read mapping using
processing-in-memory technologies. Jeremie S.
Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose,
Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu. BMC
Genomics, 19 (Suppl 2):89, 2018.
- DNA
mapping using Processor-in-Memory architecture.
Dominique Lavenier, Jean-Francois Roy, David Furodet. Proceedings
of the IEEE International Conference on Bioinformatics and
Biomedicine (BIBM 2016), Dec 15-18, 2016, Shenzen, China.
